R Integration in East
- R Integration for East
- How to Enable R Integration
- Custom Variables in Existing R Connection
- How to Enable Custom Variables
- Special Case
R Integration in East Simulation
You can integrate and execute R scripts, specifically tailored for R version 4.1.3. This integration allows for advanced data analysis and visualization directly within simulations in East. The following tasks include R integration.
| Endpoint | Study Design | Task Category | |||||||||
| Initial-ization | Generate Resp-onse | Rando-mize Subjects | Generate Arrival Times | Generate Drop-out Information | Compute Test Statistic | Re-Estimate Events | Adapt Test Statistics | Treatment Selection | Survival Assu-rance | ||
| Survival | Two Samples - Logrank Test Given Accrual Duration and Accrual Rates | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | ||
| Survival | Two Samples - Logrank Test Given Accrual Duration and Study Duration | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | |
| Continuous | Two Samples - Difference of Means | Yes | Yes | Yes | Yes | Yes | Yes | Yes | |||
| Binary | Two Samples - Difference of Proportion | Yes | Yes | Yes | Yes | Yes | Yes | Yes | |||
| Binary | Two Samples - Ratio of Proportion | Yes | Yes | Yes | Yes | Yes | Yes | Yes | |||
| Binary | Two Samples - Odds Ratio of Proportion | Yes | Yes | Yes | Yes | Yes | Yes | ||||
| Binary | Many Samples - Chi Square for Specified Proportions in C Categories | Yes | Yes | Yes | Yes | Yes | |||||
| Binary | Many Samples - Two Group Chi Square for Proportions in C Categories | Yes | Yes | Yes | Yes | Yes | |||||
| Continuous | Multiple Looks - Combining P Values | Yes | Yes | ||||||||
| Binary | Multiple Looks - Combining P Values | Yes | Yes | ||||||||
| Survival | Multiple Looks - Combining P Values | Yes | Yes | ||||||||
How to Enable R Integration
- Navigate to the "Include Options" section by clicking the button on the right top corner in the Simulation input window and select the “User Defined R Function“ option.
- A list of possible “Tasks” will appear.
- For the desired Task, place the cursor in the “File Name“ field and click “Browse“ to select the desired user defined R file. The path will then be shown in the “File Name“ field.
- To copy the function's name from the R function, click “View“ in the simulation input after clicking the “Function name” field.
- Click the Simulate button to execute the simulation including custom functions in the R script.
Custom Variables in R Connection
- To include relevant variables from your custom user defined R function, select the desired Task and click "Add/Edit Variables"
- Provide the appropriate information for "Variable Name" and "Variable Value" that aligns with your R function.
- Computations will now proceed inclusive of your custom R functions.
- Click the Simulate button to execute the R script with the newly defined custom variable(s).
Special cases
- Assurance (Probability of success): Select the checkbox, then under the distribution section, choose the user-specified R function option.
- Adapt test statistic and re-estimate completers/events: When simulating, click on SSR (which adapts the test statistic and re-estimates completers/events) and then select the R function from the options. The process should also work if the R function is selected before clicking SSR.
- MAMS designs: To select a treatment using MAMS designs, click the "Use R for Treatment Selection" checkbox to activate R integration.
See Also
East Hosted
General
Product Features,
R Code,
R Connection